🛠 Tools & Utilities

Interactive utilities for HIV sequence analysis, mutation processing, and resistance interpretation workflows.

Sequence Utilities
FASTA Sequence Tools
  • Sequence quality validation
  • Length & composition analysis
  • Stop codon detection
  • Ambiguous base identification
Batch Processing
  • Multi-FASTA splitting
  • Sequence deduplication
  • Format conversion
Mutation Tools
Mutation Analysis
  • Mutation lookup (Stanford/ANRS/IAS)
  • Codon → amino acid translation
  • Mutation pattern extraction
  • Drug-specific mutation lists
Mutation Conversion
  • HXB2 coordinate conversion
  • Mutation list formatting
  • CSV/JSON export
Analysis Tools
Sequence Comparison
  • Consensus sequence generator
  • Distance matrix calculator
  • Subtype inference (v2)
  • Phylogenetic tree builder
Resistance Analysis
  • Resistance score calculator
  • Drug susceptibility predictor
  • Treatment regimen analyzer
Data Conversion Tools
Format Conversion
  • FASTA ↔ GenBank converter
  • CSV to JSON/XML conversion
  • Excel report generator
  • PDF report creator
Export Utilities
  • Batch CSV export tool
  • JSON API response formatter
  • Clinical report templates
ML/API Tools
Machine Learning
  • Model performance analyzer
  • Prediction confidence estimator
  • Feature importance viewer
  • Cross-validation calculator
API & Integration
  • API endpoint tester
  • Batch job manager
  • Webhook configuration
Admin & Diagnostic Tools
System Diagnostics
  • Model status checker
  • Database connection test
  • Memory/CPU monitor
  • Log file viewer
Administration
  • User management
  • Job queue monitor
  • Backup/restore utilities
Quick Tools (Available Now)
Mutation Lookup
Codon Translator
Sequence Validator
Format Converter
Development Roadmap

Phase 1 (v1.1): Mutation lookup, codon translation, sequence validator

Phase 2 (v1.2): Consensus generator, subtype inference, batch processing

Phase 3 (v2.0): Full ML toolset, API integration, advanced diagnostics