🛠 Tools & Utilities

Interactive utilities for HIV sequence analysis, mutation processing, and resistance interpretation workflows.

📊 HIVDR Sequence Repository
Public archive for HIV drug resistance sequences - Data available for further analysis
How to Submit:
  1. Fill all required fields (*)
  2. Paste FASTA sequence (A,T,G,C only)
  3. Click "Submit to Repository"
  4. Copy the assigned Accession ID (PGX_XXXXXX) for citation
How to Access Data:
  1. View all sequences at /public_archive
  2. Download individual sequences as FASTA
  3. Download complete dataset as FASTA file
  4. Use accession ID to cite specific sequences
1. Basic Information
Your internal laboratory identifier
Anonymous patient code
Unique identifier - use when citing this sequence
2. Authors & Attribution
3. Molecular Information
4. Clinical & Demographic Information
5. Risk Factors
6. Sequence Data
Nucleotide sequence (A, T, G, C only). FASTA header is optional.
Sequence Utilities
FASTA Sequence Tools
  • Sequence quality validation
  • Length & composition analysis
  • Stop codon detection
  • Ambiguous base identification
Batch Processing
  • Multi-FASTA splitting
  • Sequence deduplication
  • Format conversion
Mutation Tools
Mutation Analysis
  • Mutation lookup (Stanford/ANRS/IAS)
  • Codon → amino acid translation
  • Mutation pattern extraction
  • Drug-specific mutation lists
Mutation Conversion
  • HXB2 coordinate conversion
  • Mutation list formatting
  • CSV/JSON export
Quick Tools
Mutation Lookup
Codon Translator
Sequence Validator
Format Converter
Development Roadmap

Phase 1 (v1.1): Mutation lookup, codon translation, sequence validator

Phase 2 (v1.2): Consensus generator, subtype inference, batch processing

Phase 3 (v2.0): Full ML toolset, API integration, advanced diagnostics